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Yields and purities of individual BERAs produced on a large scale using the nCAR platform and isolated by <t> FPLC </t> method
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Yields and purities of individual BERAs produced on a large scale using the nCAR platform and isolated by <t> FPLC </t> method
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Yields and purities of individual BERAs produced on a large scale using the nCAR platform and isolated by <t> FPLC </t> method
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Yields and purities of individual BERAs produced on a large scale using the nCAR platform and isolated by  FPLC  method

Journal: The Journal of Pharmacology and Experimental Therapeutics

Article Title: Bioengineered Noncoding RNAs Selectively Change Cellular miRNome Profiles for Cancer Therapy

doi: 10.1124/jpet.118.247775

Figure Lengend Snippet: Yields and purities of individual BERAs produced on a large scale using the nCAR platform and isolated by FPLC method

Article Snippet: Large-scale purification of target BERA was performed with a NGC QUEST 10PLUS fast protein liquid chromatography system (Bio-Rad) equipped with an anion exchange Enrich-Q 10 × 100 column (Bio-Rad).

Techniques: Produced, Isolation

Three-step strategy to bioengineer ncRNA agents using nCAR. (A) In step 1, the ncRNAs of interest are cloned into the target vector (Supplemental Fig. S2), where the miR-34a duplex (red/green) is replaced by target sRNAs (e.g., miRNA, siRNA or antisense RNA, RNA aptamers, etc.) of interest. (B) In step 2, the verified plasmid is transformed into E. coli and total RNAs are isolated postfermentation for urea-PAGE analysis of target BERA expression. Among 42 target ncRNAs, 33 showed remarkable high-level expression (40%–80% of total RNAs). Total RNAs from untransformed wild-type bacteria (WT) are used for comparison. (C) Finally, in step 3, ncRNAs are isolated either on small scale using spin columns or large scale using fast protein liquid chromatography (FPLC) methods to offer micrograms or milligrams of BERAs, respectively. B, blank nontransformed E. coli; E, eluate; FT, flow through; T, total RNA; W1-2, washes. Fractions 1–11 were collected at various times during FPLC isolation. RNA purity was verified by high-performance liquid chromatography (HPLC) analysis (Supplemental Fig. S3), and both methods could offer >98% pure, ready-to-use BERAs.

Journal: The Journal of Pharmacology and Experimental Therapeutics

Article Title: Bioengineered Noncoding RNAs Selectively Change Cellular miRNome Profiles for Cancer Therapy

doi: 10.1124/jpet.118.247775

Figure Lengend Snippet: Three-step strategy to bioengineer ncRNA agents using nCAR. (A) In step 1, the ncRNAs of interest are cloned into the target vector (Supplemental Fig. S2), where the miR-34a duplex (red/green) is replaced by target sRNAs (e.g., miRNA, siRNA or antisense RNA, RNA aptamers, etc.) of interest. (B) In step 2, the verified plasmid is transformed into E. coli and total RNAs are isolated postfermentation for urea-PAGE analysis of target BERA expression. Among 42 target ncRNAs, 33 showed remarkable high-level expression (40%–80% of total RNAs). Total RNAs from untransformed wild-type bacteria (WT) are used for comparison. (C) Finally, in step 3, ncRNAs are isolated either on small scale using spin columns or large scale using fast protein liquid chromatography (FPLC) methods to offer micrograms or milligrams of BERAs, respectively. B, blank nontransformed E. coli; E, eluate; FT, flow through; T, total RNA; W1-2, washes. Fractions 1–11 were collected at various times during FPLC isolation. RNA purity was verified by high-performance liquid chromatography (HPLC) analysis (Supplemental Fig. S3), and both methods could offer >98% pure, ready-to-use BERAs.

Article Snippet: Large-scale purification of target BERA was performed with a NGC QUEST 10PLUS fast protein liquid chromatography system (Bio-Rad) equipped with an anion exchange Enrich-Q 10 × 100 column (Bio-Rad).

Techniques: Clone Assay, Plasmid Preparation, Transformation Assay, Isolation, Expressing, Bacteria, Comparison, Fast Protein Liquid Chromatography, High Performance Liquid Chromatography